skbio.tree.TreeNode.from_linkage_matrix#
- classmethod TreeNode.from_linkage_matrix(linkage_matrix, id_list)[source]#
Return tree from SciPy linkage matrix.
- Parameters:
- linkage_matrixndarray
A linkage matrix generated by
scipy.cluster.hierarchy.linkage.- id_listlist
Corresponding IDs of the indices in the linkage matrix.
- Returns:
- TreeNode
An unrooted bifurcated tree.
See also