skbio.tree.TreeNode.from_linkage_matrix#

classmethod TreeNode.from_linkage_matrix(linkage_matrix, id_list)[source]#

Return tree from SciPy linkage matrix.

Parameters:
linkage_matrixndarray

A linkage matrix generated by scipy.cluster.hierarchy.linkage.

id_listlist

Corresponding IDs of the indices in the linkage matrix.

Returns:
TreeNode

An unrooted bifurcated tree.