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skbio.tree.TreeNode.from_linkage_matrix#

classmethod TreeNode.from_linkage_matrix(linkage_matrix, id_list)[source]#

Return tree from SciPy linkage matrix.

Parameters:
linkage_matrixndarray

A SciPy linkage matrix as returned by scipy.cluster.hierarchy.linkage

id_listlist

The indices of the id_list will be used in the linkage_matrix

Returns:
TreeNode

An unrooted bifurcated tree