skbio.tree.TreeNode.from_linkage_matrix#
- classmethod TreeNode.from_linkage_matrix(linkage_matrix, id_list)[source]#
Return tree from SciPy linkage matrix.
- Parameters:
- linkage_matrixndarray
A SciPy linkage matrix as returned by scipy.cluster.hierarchy.linkage
- id_listlist
The indices of the id_list will be used in the linkage_matrix
- Returns:
- TreeNode
An unrooted bifurcated tree
See also