Data Table (skbio.table)#

This module provides support for interaction with data tables in the Biological Observation Matrix (BIOM) format.

Please refer to the BIOM documentation for the instructions on working with BIOM tables.

BIOM table#

Table(data, observation_ids, sample_ids[, ...])

The (canonically pronounced 'teh') Table.

Example data#

example_table

The (canonically pronounced 'teh') Table.

Data Augmentation#

phylomix(table, tree, tip_to_obs_mapping, ...)

Data augmentation by phylomix.

compositional_cutmix(table, samples[, ...])

Data Augmentation by compositional cutmix.

mixup(table, samples[, label, alpha, ...])

Data Augmentation by vanilla mixup.

aitchison_mixup(table, samples[, label, ...])

Data Augmentation by Aitchison mixup.