Configuration Options

This module provides a configuration system that controls the global behavior of all scikit-bio functionalities.

Functions

get_config	Get the current value of a scikit-bio configuration option.
set_config	Set a scikit-bio configuration option.

Configuration options

table_output{“pandas”, “numpy”, “polars”}, default=”pandas”

The preferred output format of tables. See details.

engine{“cython”, “numba”}, default=”cython”

The default compute engine for functions that support multiple engines. Functions accept an engine argument to override this per call. The "numba" engine requires the optional Numba dependency.