skbio.embedding.SequenceVector

class skbio.embedding.SequenceVector(vector, sequence, **kwargs)

Vector representation for a biological sequence.

Parameters:

vector1D or 2D array_like

The vector representation of the sequence. Typically a 1D array. Can also be a 2D array with only one row.

sequencestr, Sequence, or 1D ndarray

Characters representing the sequence itself.

See also

EmbeddingVector

skbio.sequence.Sequence

Attributes

sequence

String representation of the underlying sequence.

Attributes (inherited)

embedding	The embedding tensor.
ids	IDs corresponding to each row of the embedding.
vector	Vector representation for the biological entity.

Methods (inherited)

bytes()	Bytes representation of string encoding.
read([format])	Create a new SequenceVector instance from a file.
write(file[, format])	Write an instance of SequenceVector to a file.

Special methods (inherited)

__eq__(value, /)	Return self==value.
__ge__(value, /)	Return self>=value.
__getstate__(/)	Helper for pickle.
__gt__(value, /)	Return self>value.
__hash__(/)	Return hash(self).
__le__(value, /)	Return self<=value.
__lt__(value, /)	Return self<value.
__ne__(value, /)	Return self!=value.
__str__()	Return str(self).

Details

sequence

String representation of the underlying sequence.