skbio.embedding.SequenceVector

class skbio.embedding.SequenceVector(vector, sequence, **kwargs)

Vector representation for a biological sequence.

Parameters:

vector1D or 2D array_like

The vector representation of the sequence. Typically a 1D array. Can also be a 2D array with only one row.

sequencestr, Sequence, or 1D ndarray

Characters representing the sequence itself.

See also

EmbeddingVector

skbio.sequence.Sequence

Attributes

sequence

String representation of the underlying sequence.

Attributes (inherited)

embedding	The embedding tensor.
ids	IDs corresponding to each row of the embedding.
vector	Vector representation for the biological entity.

Methods (inherited)

bytes	Bytes representation of string encoding.
read	Create a new SequenceVector instance from a file.
write	Write an instance of SequenceVector to a file.

Special methods (inherited)

__eq__	Return self==value.
__ge__	Return self>=value.
__getstate__	Helper for pickle.
__gt__	Return self>value.
__hash__	Return hash(self).
__le__	Return self<=value.
__lt__	Return self<value.
__ne__	Return self!=value.
__str__	Return str(self).

Details

sequence

String representation of the underlying sequence.