skbio.embedding.EmbeddingVector

class skbio.embedding.EmbeddingVector(vector, obj, **kwargs)

Vector representation for a biological entity.

Parameters:

vector1D or 2D array_like

The vector representation of the sequence. Typically a 1D array. Can also be a 2D array with only one row.

sequencestr, Sequence, or 1D ndarray

Characters representing the sequence itself.

See also

Embedding

Attributes

embedding	The embedding tensor.
vector	Vector representation for the biological entity.

Attributes (inherited)

ids	IDs corresponding to each row of the embedding.

Methods (inherited)

bytes()	Bytes representation of string encoding.
read([format])	Create a new EmbeddingVector instance from a file.
write(file[, format])	Write an instance of EmbeddingVector to a file.

Special methods

__str__()

Return str(self).

Special methods (inherited)

__eq__(value, /)	Return self==value.
__ge__(value, /)	Return self>=value.
__getstate__(/)	Helper for pickle.
__gt__(value, /)	Return self>value.
__hash__(/)	Return hash(self).
__le__(value, /)	Return self<=value.
__lt__(value, /)	Return self<value.
__ne__(value, /)	Return self!=value.

Details

embedding

The embedding tensor.

vector

Vector representation for the biological entity.

__str__()

Return str(self).