skbio.embedding.EmbeddingVector

class skbio.embedding.EmbeddingVector(vector, obj, **kwargs)

Vector representation for a biological entity.

Parameters:

vector1D or 2D array_like

The vector representation of the sequence. Typically a 1D array. Can also be a 2D array with only one row.

sequencestr, Sequence, or 1D ndarray

Characters representing the sequence itself.

See also

Embedding

Attributes

embedding	The embedding tensor.
vector	Vector representation for the biological entity.

Attributes (inherited)

ids	IDs corresponding to each row of the embedding.

Methods (inherited)

bytes	Bytes representation of string encoding.
read	Create a new EmbeddingVector instance from a file.
write	Write an instance of EmbeddingVector to a file.

Special methods

__str__

Return str(self).

Special methods (inherited)

__eq__	Return self==value.
__ge__	Return self>=value.
__getstate__	Helper for pickle.
__gt__	Return self>value.
__hash__	Return hash(self).
__le__	Return self<=value.
__lt__	Return self<value.
__ne__	Return self!=value.

Details

embedding

The embedding tensor.

vector

Vector representation for the biological entity.

__str__()

Return str(self).