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Install
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Input and Output (skbio.io)
Biological Sequences (skbio.sequence)
Sequence Alignments (skbio.alignment)
Trees and Phylogenetics (skbio.tree)
Community Diversity (skbio.diversity)
Multivariate Statistics (skbio.stats)
Biological Embeddings (skbio.embedding)
Data Table (skbio.table)
Metadata (skbio.metadata)
Workflow construction (skbio.workflow)
Utilities for Developers (skbio.util)

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skbio.sequence.Sequence
skbio.sequence.GrammaredSequence
skbio.sequence.DNA
skbio.sequence.RNA
skbio.sequence.Protein

skbio.sequence.GeneticCode
skbio.sequence.SubstitutionMatrix

Sequence distance metrics (skbio.sequence.distance)

skbio.sequence.NucleotideMixin

Biological Sequences (skbio.sequence)
skbio.sequence.SubstitutionMatrix
skbio.sequence.SubstitutionMatrix.identity

skbio.sequence.SubstitutionMatrix.identity#

classmethod SubstitutionMatrix.identity(alphabet, match, mismatch, dtype='float32')[source]#

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skbio.sequence.SubstitutionMatrix.get_names

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skbio.sequence.SubstitutionMatrix.to_dict

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SubstitutionMatrix.identity

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