skbio.sequence.GrammaredSequence.gaps#

GrammaredSequence.gaps()[source]#

Find positions containing gaps in the biological sequence.

Returns:
1D np.ndarray (bool)

Boolean vector where True indicates a gap character is present at that position in the biological sequence.

See also

has_gaps

Examples

>>> from skbio import DNA
>>> s = DNA('AC-G-')
>>> s.gaps()
array([False, False,  True, False,  True], dtype=bool)