Beta diversity measures (skbio.diversity.beta
)#
This package provides implementations of beta diversity measures for computing sample
dissimilarity. Users should also explore SciPy’s pdist
,
which provides implementations of additional beta diversity metrics with interfaces
similar to those provided here, and can be directly used in the driver function
beta_diversity
.
Functions#
|
Compute unweighted UniFrac. |
|
Compute weighted UniFrac with or without branch length normalization. |