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Install
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Documentation
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About
Input and Output (skbio.io)
Biological Sequences (skbio.sequence)
Sequence Alignments (skbio.alignment)
Trees and Phylogenetics (skbio.tree)
Community Diversity (skbio.diversity)
Multivariate Statistics (skbio.stats)
Biological Embeddings (skbio.embedding)
Data Table (skbio.table)
Metadata (skbio.metadata)
Workflow construction (skbio.workflow)
Utilities for Developers (skbio.util)

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skbio.alignment.TabularMSA
skbio.alignment.AlignPath
skbio.alignment.PairAlignPath

skbio.alignment.StripedSmithWaterman
skbio.alignment.AlignmentStructure
skbio.alignment.local_pairwise_align_ssw

skbio.alignment.global_pairwise_align_nucleotide
skbio.alignment.global_pairwise_align_protein
skbio.alignment.global_pairwise_align
skbio.alignment.local_pairwise_align_nucleotide
skbio.alignment.local_pairwise_align_protein
skbio.alignment.local_pairwise_align

skbio.alignment.make_identity_substitution_matrix

Sequence Alignments (skbio.alignment)
skbio.alignment.PairAlignPath
skbio.alignment.PairAlignPath.to_bits

skbio.alignment.PairAlignPath.to_bits#

PairAlignPath.to_bits()[source]#: Unpack states into an array of bits.

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PairAlignPath.to_bits()

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