skbio.alignment.PairAlignPath.from_bits

classmethod PairAlignPath.from_bits(bits, starts=None)

Create a pairwise alignment path from a bit array.

Refer to AlignPath.from_bits for usage.

Parameters:

bitsarray_like of (0, 1) of shape (2, n_positions)

Bit array representing the alignment.

startsarray_like of int of shape (2,), optional

Start positions of sequences.

Returns:

PairAlignPath

The pairwise alignment path created from the given bit array.

See also

AlignPath.from_bits