skbio.alignment.AlignPath.from_tabular

classmethod AlignPath.from_tabular(msa, starts=None)

Create an alignment path from a TabularMSA object.

Parameters:

msaTabularMSA

TabularMSA to be converted into AlignPath object.

startsarray-like of int of shape (2,), optional

Start positions of sequences. If omitted, will be all zeros.

Returns:

AlignPath

The alignment path created from the TabularMSA object.

See also

from_aligned

skbio.TabularMSA.from_path_seqs

Notes

This method is more efficient and more specific than from_aligned.