skbio.alignment.AlignPath.from_tabular#

classmethod AlignPath.from_tabular(msa)[source]#

Create an alignment path from a TabularMSA object.

Parameters:

msaTabularMSA: TabularMSA to be converted into AlignPath object.

Returns:

AlignPath: The alignment path created from the TabularMSA object.

See also

skbio.TabularMSA.from_path_seqs

Notes

The returned alignment path will span across the entire tabular MSA. Its start positions will be uniformly zeros.