skbio.alignment.AlignPath.from_tabular#
- classmethod AlignPath.from_tabular(msa, starts=None)[source]#
Create an alignment path from a TabularMSA object.
- Parameters:
- msaTabularMSA
TabularMSA to be converted into AlignPath object.
- startsarray_like of int of shape (2,), optional
Start positions of sequences. If omitted, will be all zeros.
- Returns:
- AlignPath
The alignment path created from the TabularMSA object.
See also
from_alignedskbio.TabularMSA.from_path_seqs
Notes
This method is more efficient and more specific than
from_aligned.