skbio.embedding.SequenceEmbedding

class skbio.embedding.SequenceEmbedding(embedding, sequence, **kwargs)

Embedding for a biological sequence.

Parameters:

embeddingarray_like

The embedding of the sequence. Row vectors correspond to the latent character coordinates.

sequencestr, Sequence, or 1D ndarray

Characters representing the sequence itself.

See also

Embedding

skbio.sequence.Sequence

Attributes

embedding	The embedding tensor.
ids	IDs corresponding to each row of the embedding.
sequence	String representation of the underlying sequence.

Built-ins

__eq__(value, /)	Return self==value.
__ge__(value, /)	Return self>=value.
__getstate__(/)	Helper for pickle.
__gt__(value, /)	Return self>value.
__hash__(/)	Return hash(self).
__le__(value, /)	Return self<=value.
__lt__(value, /)	Return self<value.
__ne__(value, /)	Return self!=value.
__str__()	String representation of the underlying sequence.

Methods

bytes()

Bytes representation of string encoding.