skbio.embedding.Embedding

class skbio.embedding.Embedding(embedding, ids, **kwargs)

Embedding for a biological object.

Parameters:

embeddingarray_like

Embedding matrix where the first axis is indexed by ids.

idsarray_like

IDs of biological objects.

Attributes

embedding	The embedding tensor.
ids	IDs corresponding to each row of the embedding.

Methods

bytes()	Bytes representation of string encoding.
read([format])	Create a new Embedding instance from a file.
write(file[, format])	Write an instance of Embedding to a file.

Special methods

__str__()

Return str(self).

Special methods (inherited)

__eq__(value, /)	Return self==value.
__ge__(value, /)	Return self>=value.
__getstate__(/)	Helper for pickle.
__gt__(value, /)	Return self>value.
__hash__(/)	Return hash(self).
__le__(value, /)	Return self<=value.
__lt__(value, /)	Return self<value.
__ne__(value, /)	Return self!=value.

Details

embedding

The embedding tensor.

ids

IDs corresponding to each row of the embedding.

__str__()

Return str(self).