skbio.alignment.PairAlignPath.from_tabular

classmethod PairAlignPath.from_tabular(msa)

Create an alignment path from a TabularMSA object.

Parameters:

msaTabularMSA

TabularMSA to be converted into AlignPath object.

Returns:

AlignPath

The alignment path created from the TabularMSA object.

See also

skbio.TabularMSA.from_path_seqs

Notes

The returned alignment path will span across the entire tabular MSA. Its start positions will be uniformly zeros.