skbio.alignment.PairAlignPath.from_bits

classmethod PairAlignPath.from_bits(bits)

Create a pairwise alignment path from a bit array.

Parameters:

bitsarray_like of 0’s and 1’s of shape (n_seqs, n_positions)

Array of zeros (character) and ones (gap) which represent the alignment.

Returns:

PairAlignPath

The pairwise alignment path of the provided bit array.