skbio.sequence.SubstitutionMatrix.redundant_form

SubstitutionMatrix.redundant_form()

Return an array of dissimilarities in redundant format.

As this is the native format that the dissimilarities are stored in, this is simply an alias for data.

Returns:

ndarray

Two-dimensional numpy.ndarray of dissimilarities in redundant format.

Notes

Redundant format is described in [1].

Does not return a copy of the data.

References

[1]

http://docs.scipy.org/doc/scipy/reference/spatial.distance.html