skbio.sequence.GrammaredSequence.mismatches

GrammaredSequence.mismatches(other)

Find positions that do not match with another sequence.

Parameters:

otherstr, Sequence, or 1D np.ndarray (np.uint8 or ‘|S1’)

Sequence to compare to.

Returns:

1D np.ndarray (bool)

Boolean vector where True at position i indicates a mismatch between the sequences at their positions i.

Raises:

ValueError

If the sequences are not the same length.

TypeError

If other is a Sequence object with a different type than this sequence.

See also

matches

Examples

>>> from skbio import Sequence
>>> s = Sequence('GGUC')
>>> t = Sequence('GAUU')
>>> s.mismatches(t)
array([False,  True, False,  True], dtype=bool)